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Sample GSM395722 Query DataSets for GSM395722
Status Public on May 21, 2010
Title SNU75
Sample type RNA
Source name combined hepatocellular carcinoma and cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: combined hepatocellular carcinoma and cholangiocarcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 7.561371268
1053_at 6.372238607
117_at 5.125235732
121_at 6.719108457
1255_g_at 2.736730027
1294_at 7.065867687
1316_at 4.74520846
1320_at 4.925605553
1405_i_at 4.170029442
1431_at 12.14918942
1438_at 4.450359858
1487_at 7.346166039
1494_f_at 5.688453666
1598_g_at 7.885412019
160020_at 6.612963469
1729_at 6.890420872
1773_at 4.895511982
177_at 4.392732791
179_at 7.756703059
1861_at 6.114446017

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395722.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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