NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM395721 Query DataSets for GSM395721
Status Public on May 21, 2010
Title SNU74
Sample type RNA
 
Source name combined hepatocellular carcinoma and cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: combined hepatocellular carcinoma and cholangiocarcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
 
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
 
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
 
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
1007_s_at 7.521251179
1053_at 5.583757805
117_at 5.871656008
121_at 7.093238979
1255_g_at 2.908476328
1294_at 7.258457417
1316_at 5.417397653
1320_at 3.67752958
1405_i_at 6.653935704
1431_at 12.11754268
1438_at 5.023386214
1487_at 7.991385251
1494_f_at 10.9741323
1598_g_at 8.862194678
160020_at 6.742115666
1729_at 7.011264542
1773_at 4.657520652
177_at 5.294432238
179_at 8.309489587
1861_at 4.600811415

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM395721.CEL.gz 1.7 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap