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Sample GSM395720 Query DataSets for GSM395720
Status Public on May 21, 2010
Title SNU73
Sample type RNA
Source name combined hepatocellular carcinoma and cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: combined hepatocellular carcinoma and cholangiocarcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 8.089420325
1053_at 6.575253723
117_at 4.740262429
121_at 7.299786999
1255_g_at 2.686163502
1294_at 5.289729147
1316_at 4.70782138
1320_at 3.702473185
1405_i_at 4.209243191
1431_at 9.531917625
1438_at 4.833265423
1487_at 7.797428947
1494_f_at 5.368594235
1598_g_at 7.328674374
160020_at 6.585578426
1729_at 6.70115942
1773_at 4.827655701
177_at 5.248803
179_at 7.748005213
1861_at 4.488356637

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395720.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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