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Sample GSM395699 Query DataSets for GSM395699
Status Public on May 21, 2010
Title SNU52
Sample type RNA
 
Source name hepatocellular carcinoma
Organism Homo sapiens
Characteristics tissue: hepatocellular carcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
 
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
 
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
 
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
1007_s_at 6.679904119
1053_at 6.720469639
117_at 5.520496087
121_at 6.656983705
1255_g_at 2.422771869
1294_at 7.194899443
1316_at 4.379249015
1320_at 4.120481381
1405_i_at 5.802790286
1431_at 12.74382543
1438_at 4.036864073
1487_at 7.309222806
1494_f_at 8.0086841
1598_g_at 6.822413893
160020_at 6.229883096
1729_at 7.065662519
1773_at 5.945194164
177_at 6.021363708
179_at 7.142841512
1861_at 6.430756868

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM395699.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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