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Sample GSM395698 Query DataSets for GSM395698
Status Public on May 21, 2010
Title SNU51
Sample type RNA
Source name hepatocellular carcinoma
Organism Homo sapiens
Characteristics tissue: hepatocellular carcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 8.614615395
1053_at 6.683194676
117_at 5.291759407
121_at 6.924268139
1255_g_at 2.584159076
1294_at 6.915128453
1316_at 4.434643704
1320_at 3.879467791
1405_i_at 6.705057387
1431_at 10.05740692
1438_at 4.331869272
1487_at 7.079915119
1494_f_at 8.625811052
1598_g_at 8.272508196
160020_at 5.962546709
1729_at 6.971084921
1773_at 5.078685846
177_at 5.812690901
179_at 7.385394422
1861_at 6.100040522

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395698.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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