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Sample GSM395696 Query DataSets for GSM395696
Status Public on May 21, 2010
Title SNU49
Sample type RNA
Source name hepatocellular carcinoma
Organism Homo sapiens
Characteristics tissue: hepatocellular carcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 7.581733887
1053_at 6.932612175
117_at 6.708297539
121_at 6.253645554
1255_g_at 2.344588492
1294_at 5.56422955
1316_at 4.384219226
1320_at 4.550710466
1405_i_at 5.215453682
1431_at 9.048562993
1438_at 4.263984279
1487_at 7.206853073
1494_f_at 6.181199264
1598_g_at 7.103235206
160020_at 6.028123076
1729_at 6.881355218
1773_at 5.726632963
177_at 7.274596729
179_at 7.135154051
1861_at 6.867502292

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395696.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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