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Sample GSM395695 Query DataSets for GSM395695
Status Public on May 21, 2010
Title SNU48
Sample type RNA
Source name hepatocellular carcinoma
Organism Homo sapiens
Characteristics tissue: hepatocellular carcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 8.260736413
1053_at 7.258865761
117_at 5.523554389
121_at 6.326835716
1255_g_at 2.591007659
1294_at 6.366196385
1316_at 4.246116891
1320_at 3.961552312
1405_i_at 8.599804834
1431_at 10.3690539
1438_at 3.986786987
1487_at 7.05775839
1494_f_at 3.949469703
1598_g_at 7.179763677
160020_at 5.906605156
1729_at 7.186455645
1773_at 5.241390853
177_at 6.535504425
179_at 7.268540963
1861_at 5.789587858

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395695.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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