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Sample GSM395691 Query DataSets for GSM395691
Status Public on May 21, 2010
Title SNU44
Sample type RNA
Source name hepatocellular carcinoma
Organism Homo sapiens
Characteristics tissue: hepatocellular carcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 8.776317902
1053_at 6.659808685
117_at 7.44158449
121_at 6.360829485
1255_g_at 2.456438451
1294_at 6.605400128
1316_at 4.364132231
1320_at 3.896463523
1405_i_at 6.496172749
1431_at 3.267185284
1438_at 4.654461208
1487_at 7.491285142
1494_f_at 4.413103052
1598_g_at 7.076403258
160020_at 7.806610073
1729_at 6.521068753
1773_at 5.212811502
177_at 5.345196297
179_at 6.888347234
1861_at 6.911560207

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395691.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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