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Sample GSM395658 Query DataSets for GSM395658
Status Public on May 21, 2010
Title SNU12
Sample type RNA
Source name hepatocellular carcinoma
Organism Homo sapiens
Characteristics tissue: hepatocellular carcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 7.678988576
1053_at 7.524682383
117_at 5.496359929
121_at 6.687067247
1255_g_at 2.56749383
1294_at 7.12657473
1316_at 4.269518657
1320_at 3.738758504
1405_i_at 4.80765352
1431_at 3.002680737
1438_at 4.163783726
1487_at 8.056309685
1494_f_at 11.34782925
1598_g_at 7.260398188
160020_at 5.677483203
1729_at 6.863519853
1773_at 5.35351179
177_at 5.902185988
179_at 7.161324342
1861_at 7.174973426

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395658.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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