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Sample GSM395657 Query DataSets for GSM395657
Status Public on May 21, 2010
Title SNU11
Sample type RNA
Source name hepatocellular carcinoma
Organism Homo sapiens
Characteristics tissue: hepatocellular carcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 8.006882933
1053_at 6.851830285
117_at 5.472320528
121_at 6.85193167
1255_g_at 2.55625492
1294_at 7.187442945
1316_at 4.401435234
1320_at 3.738952166
1405_i_at 7.501542283
1431_at 9.287300118
1438_at 4.319715426
1487_at 7.265868802
1494_f_at 11.62061367
1598_g_at 7.872299402
160020_at 6.278651878
1729_at 6.663131724
1773_at 5.138922757
177_at 5.319528017
179_at 7.325706398
1861_at 6.563497117

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395657.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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