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Sample GSM395656 Query DataSets for GSM395656
Status Public on May 21, 2010
Title SNU10
Sample type RNA
 
Source name hepatocellular carcinoma
Organism Homo sapiens
Characteristics tissue: hepatocellular carcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
 
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
 
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
 
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
1007_s_at 9.111310919
1053_at 6.79266805
117_at 4.991053923
121_at 6.342363494
1255_g_at 2.560136091
1294_at 6.942383175
1316_at 4.276108709
1320_at 4.229247834
1405_i_at 5.661779113
1431_at 4.180862004
1438_at 4.055308751
1487_at 6.982075252
1494_f_at 11.46168013
1598_g_at 6.590192902
160020_at 6.083466652
1729_at 6.970845498
1773_at 5.609076793
177_at 7.295539752
179_at 7.646253855
1861_at 6.330754116

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM395656.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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