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Sample GSM395654 Query DataSets for GSM395654
Status Public on May 21, 2010
Title SNU8
Sample type RNA
Source name hepatocellular carcinoma
Organism Homo sapiens
Characteristics tissue: hepatocellular carcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 7.472099349
1053_at 5.82982622
117_at 6.898016712
121_at 6.524126959
1255_g_at 2.530578215
1294_at 6.932283268
1316_at 4.298026147
1320_at 3.661569436
1405_i_at 9.599085002
1431_at 11.71627728
1438_at 4.495686327
1487_at 6.98603779
1494_f_at 10.87574635
1598_g_at 8.521195355
160020_at 6.013214151
1729_at 6.968569766
1773_at 4.532720306
177_at 5.431646666
179_at 7.087398415
1861_at 5.703251919

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395654.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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