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Sample GSM395650 Query DataSets for GSM395650
Status Public on May 21, 2010
Title SNU4
Sample type RNA
Source name hepatocellular carcinoma
Organism Homo sapiens
Characteristics tissue: hepatocellular carcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 7.542011467
1053_at 7.214308351
117_at 5.889509785
121_at 6.100990956
1255_g_at 2.485806628
1294_at 7.428208609
1316_at 3.97947201
1320_at 3.896740454
1405_i_at 8.006407173
1431_at 10.11438412
1438_at 4.239148575
1487_at 6.595364572
1494_f_at 9.035742571
1598_g_at 8.169123647
160020_at 6.705240137
1729_at 7.243923132
1773_at 5.284118705
177_at 5.348363153
179_at 6.920911706
1861_at 6.79922119

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395650.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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