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Sample GSM395649 Query DataSets for GSM395649
Status Public on May 21, 2010
Title SNU3
Sample type RNA
Source name hepatocellular carcinoma
Organism Homo sapiens
Characteristics tissue: hepatocellular carcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 6.870241691
1053_at 6.958553516
117_at 5.400139612
121_at 6.736833809
1255_g_at 2.348819035
1294_at 5.974383935
1316_at 4.338297484
1320_at 4.088215979
1405_i_at 7.491464946
1431_at 12.70680102
1438_at 4.409812346
1487_at 7.093248905
1494_f_at 7.786965381
1598_g_at 7.011608657
160020_at 6.537802769
1729_at 7.440043871
1773_at 5.266387478
177_at 4.357780287
179_at 7.326829875
1861_at 6.458087629

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395649.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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