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Sample GSM395647 Query DataSets for GSM395647
Status Public on May 21, 2010
Title SNU1
Sample type RNA
Source name hepatocellular carcinoma
Organism Homo sapiens
Characteristics tissue: hepatocellular carcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 7.067820055
1053_at 7.336516153
117_at 5.53716992
121_at 6.258822416
1255_g_at 2.597251786
1294_at 6.824863842
1316_at 4.157642567
1320_at 3.429110656
1405_i_at 3.880380649
1431_at 3.974081655
1438_at 4.389396201
1487_at 7.46075543
1494_f_at 9.482395195
1598_g_at 7.19803081
160020_at 5.667461062
1729_at 7.414848316
1773_at 5.110067662
177_at 5.836204309
179_at 7.089365254
1861_at 6.929519464

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395647.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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