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Sample GSM3912468 Query DataSets for GSM3912468
Status Public on Aug 05, 2020
Title EGA1
Sample type RNA
Source name ob/ob EGA islets, biological replicate 1
Organism Mus musculus
Characteristics tissue: pancreatic islets
strain: C57Bl/6J
gender: male
Treatment protocol Pancreatic islets were isolated from lean (WT) mice or from ob/ob mice, 28 days after sham or EGA surgery.
Extracted molecule total RNA
Extraction protocol RNA was extracted using the miRNeasy kit (Qiagen), according to manufacturer guidelines.
Label Cy3
Label protocol Total RNA from each sample was amplified and transcribed into fluorescent Cyanine-3 (cy3) cRNA using the manufacturer’s Agilent’s Quick Amp Labeling protocol (version 5.7, Agilent Technologies).
Hybridization protocol The labeled cRNAs were hybridized onto the Whole Mouse Genome Oligo Microarray (4 x 44K, Agilent Technologies) based on the manufacturer’s standard protocols.
Scan protocol Slides were scanned immediately after washing on the Agilent Scanner G2505C.
Description Gene expression 28 days after EGA surgery
Data processing Agilent Feature Extraction software (version was used to analyze acquired array images. Quantile normalization and subsequent data processing were performed using the GeneSpring GX v12.1 software (Agilent Technologies). After quantile normalization of the raw data, genes that at least 3 out of 6 samples have flags in Detected (“All Targets Value”) were chosen for further data analysis.
Submission date Jul 01, 2019
Last update date Aug 05, 2020
Contact name Claudiane Guay
Phone +41216925281
Organization name University of Lausanne
Department DNF
Street address Du Bugnon 9
City Lausanne
State/province Vaud
ZIP/Postal code 1005
Country Switzerland
Platform ID GPL11202
Series (2)
GSE133577 Effects of entero-gastro-anastomosis (EGA) surgery in ob/ob mice on pancreatic islet gene expression
GSE133852 ob/ob mice on pancreatic islet

Data table header descriptions
VALUE log2 value of Normalized Intensity of each sample

Data table
A_55_P1989846 5.9869823
A_55_P2022211 8.126712
A_55_P1980764 5.8549266
A_55_P1964375 10.26486
A_51_P128876 8.734829
A_55_P2121042 6.3719163
A_51_P207591 4.6426682
A_55_P2131920 6.3736773
A_55_P2404223 7.827328
A_55_P2101944 17.07019
A_52_P358860 8.565686
A_51_P119031 10.340625
A_51_P309854 7.448829
A_51_P343900 11.070908
A_51_P234359 5.4699516
A_51_P487813 10.320977
A_52_P613977 9.713101
A_55_P2096028 4.038914
A_55_P2052210 14.239285
A_51_P128987 9.281489

Total number of rows: 30398

Table truncated, full table size 686 Kbytes.

Supplementary file Size Download File type/resource
GSM3912468_EGA1.txt.gz 2.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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