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Sample GSM3896270 Query DataSets for GSM3896270
Status Public on Jun 30, 2020
Title Epithelial cells, control_6wk
Sample type SRA
 
Source name mouse lung
Organism Mus musculus
Characteristics strain: C57BL/6
genotype: control
treatment: tamoxifen treated lungs
time: 6wk
tissue: lung
cell type: epithelial cells
Extracted molecule total RNA
Extraction protocol follow standard 10x single cell 3 prime v2 kit manuscript
10x chromium single cell RNAseq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Data processing follow default Cellranger v2.2.0
Genome_build: custom mm10/GRCm38 with eGFP reporter sequence added
Supplementary_files_format_and_content: demultiplexed count matrix file
 
Submission date Jun 18, 2019
Last update date Jul 01, 2020
Contact name Changfu Yao
E-mail(s) changfu.yao@cshs.org
Phone 424-315-4333
Organization name cedars-sinai medical center
Department Lung and Regenerative Medicine Institutes
Lab Stripp Lab
Street address 8700 Beverly Blvd. AHSP Room A9401
City los angeles
State/province Ca
ZIP/Postal code 90048
Country USA
 
Platform ID GPL24247
Series (2)
GSE132910 Senescence rather than apoptosis of alveolar progenitor cells drives pulmonary fibrosis (mouse scRNAseq)
GSE132915 Senescence rather than apoptosis of alveolar progenitor cells drives pulmonary fibrosis
Relations
BioSample SAMN12086150
SRA SRX6087627

Supplementary file Size Download File type/resource
GSM3896270_control6wk_filtered_gene_bc_matrices_h5.h5 7.6 Mb (ftp)(http) H5
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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