|
| Status |
Public on Jun 30, 2020 |
| Title |
lung, 6wk3 |
| Sample type |
SRA |
| |
|
| Source name |
mouse lung
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
tissue: lung
treatment: tamoxifen
time: 6wk
|
| Extracted molecule |
total RNA |
| Extraction protocol |
qiagen mirneasy mini kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
align with STAR 2.6.0b-1 using galaxy
raw count generated by featrueCounts 1.6.0.3 using galaxy
counts normalization and differential expression using DESeq2 2.11.40.2 using galaxy
Genome_build: mm10
Supplementary_files_format_and_content: normalized count file generated by DESeq2
|
| |
|
| Submission date |
Jun 18, 2019 |
| Last update date |
Jun 30, 2020 |
| Contact name |
Changfu Yao |
| E-mail(s) |
changfu.yao@cshs.org
|
| Phone |
424-315-4333
|
| Organization name |
cedars-sinai medical center
|
| Department |
Lung and Regenerative Medicine Institutes
|
| Lab |
Stripp Lab
|
| Street address |
8700 Beverly Blvd. AHSP Room A9401
|
| City |
los angeles |
| State/province |
Ca |
| ZIP/Postal code |
90048 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (2) |
| GSE132909 |
Senescence rather than apoptosis of alveolar progenitor cells drives pulmonary fibrosis (mouse_bulk RNAseq) |
| GSE132915 |
Senescence rather than apoptosis of alveolar progenitor cells drives pulmonary fibrosis |
|
| Relations |
| BioSample |
SAMN12086125 |
| SRA |
SRX6087693 |
