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GEO accession:
Sample GSM38692
Query DataSets for GSM38692
Status
Public on Dec 20, 2005
Title
B7m2
Sample type
RNA
Source name
Trizol extracted total RNA from uterine fibroid tissue.
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Uterine fibroid tissue with mutated fumarate hydratase gene.
Submission date
Jan 10, 2005
Last update date
Dec 20, 2005
Contact name
Sakari Vanharanta
E-mail(s)
sakari.vanharanta@helsinki.fi
Organization name
University of Helsinki
Department
Translational Cancer Medicine Program
Lab
Vanharanta
Street address
Haartmaninkatu 8
City
Helsinki
ZIP/Postal code
00014
Country
Finland
Platform ID
GPL96
Series (2)
GSE2152
The effect of FH mutations on fibroid expression profile
GSE2724
The effect of FH mutations on fibroid expression profile, normal myometrium vs. FH-mutant fibroids.
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Algorithm (mean scaled to 100)
ABS_CALL
MAS 5.0 Absent, Marginal, Present call (Alpha1 = 0.05, Alpha2 = 0.065)
DETECTION P-VALUE
MAS 5.0 Detection p-value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
88
P
0.002867
AFFX-BioB-M_at
115.3
P
0.000225
AFFX-BioB-3_at
50.3
P
0.030976
AFFX-BioC-5_at
225.1
P
0.000127
AFFX-BioC-3_at
157.8
P
0.000195
AFFX-BioDn-5_at
215.7
P
0.000095
AFFX-BioDn-3_at
1472.6
P
0.000147
AFFX-CreX-5_at
2837.4
P
0.000044
AFFX-CreX-3_at
4192.1
P
0.000044
AFFX-DapX-5_at
11.7
A
0.313723
AFFX-DapX-M_at
25
A
0.165777
AFFX-DapX-3_at
1.8
A
0.981719
AFFX-LysX-5_at
1.2
A
0.904333
AFFX-LysX-M_at
10
A
0.659339
AFFX-LysX-3_at
9.6
A
0.327065
AFFX-PheX-5_at
1.9
A
0.904333
AFFX-PheX-M_at
2.2
A
0.891021
AFFX-PheX-3_at
4.1
A
0.883887
AFFX-ThrX-5_at
3.1
A
0.724854
AFFX-ThrX-M_at
1.7
A
0.772364
Total number of rows:
22283
Table truncated, full table size
578 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM38692.CEL.gz
2.9 Mb
(ftp)
(http)
CEL
GSM38692.EXP.gz
469 b
(ftp)
(http)
EXP
GSM38692.RPT.gz
945 b
(ftp)
(http)
RPT
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