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GEO accession:
Sample GSM38691
Query DataSets for GSM38691
Status
Public on Dec 20, 2005
Title
B7m1
Sample type
RNA
Source name
Trizol extracted total RNA from uterine fibroid tissue.
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Uterine fibroid tissue with mutated fumarate hydratase gene.
Submission date
Jan 10, 2005
Last update date
Dec 20, 2005
Contact name
Sakari Vanharanta
E-mail(s)
sakari.vanharanta@helsinki.fi
Organization name
University of Helsinki
Department
Translational Cancer Medicine Program
Lab
Vanharanta
Street address
Haartmaninkatu 8
City
Helsinki
ZIP/Postal code
00014
Country
Finland
Platform ID
GPL96
Series (2)
GSE2152
The effect of FH mutations on fibroid expression profile
GSE2724
The effect of FH mutations on fibroid expression profile, normal myometrium vs. FH-mutant fibroids.
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Algorithm (mean scaled to 100)
ABS_CALL
MAS 5.0 Absent, Marginal, Present call (Alpha1 = 0.05, Alpha2 = 0.065)
DETECTION P-VALUE
MAS 5.0 Detection p-value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
58.7
P
0.00762
AFFX-BioB-M_at
90.4
P
0.00141
AFFX-BioB-3_at
40.5
P
0.00141
AFFX-BioC-5_at
165.7
P
0.00034
AFFX-BioC-3_at
127.6
P
0.00034
AFFX-BioDn-5_at
120.4
P
0.000169
AFFX-BioDn-3_at
936
P
0.00039
AFFX-CreX-5_at
1599
P
0.000044
AFFX-CreX-3_at
2424.4
P
0.000044
AFFX-DapX-5_at
10.6
M
0.050229
AFFX-DapX-M_at
14.3
A
0.205732
AFFX-DapX-3_at
1.1
A
0.749204
AFFX-LysX-5_at
1.9
A
0.645547
AFFX-LysX-M_at
9.7
A
0.41138
AFFX-LysX-3_at
6.9
A
0.239063
AFFX-PheX-5_at
6.9
A
0.195266
AFFX-PheX-M_at
3
A
0.574038
AFFX-PheX-3_at
8.4
A
0.52976
AFFX-ThrX-5_at
2.8
A
0.60308
AFFX-ThrX-M_at
7.1
A
0.52976
Total number of rows:
22283
Table truncated, full table size
580 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM38691.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
GSM38691.EXP.gz
481 b
(ftp)
(http)
EXP
GSM38691.RPT.gz
939 b
(ftp)
(http)
RPT
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