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GEO accession:
Sample GSM38688
Query DataSets for GSM38688
Status
Public on Dec 20, 2005
Title
9m5
Sample type
RNA
Source name
Trizol extracted total RNA from uterine fibroid tissue.
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Uterine fibroid tissue carrying wild-type fumarate hydratase gene.
Submission date
Jan 10, 2005
Last update date
Dec 20, 2005
Contact name
Sakari Vanharanta
E-mail(s)
sakari.vanharanta@helsinki.fi
Organization name
University of Helsinki
Department
Translational Cancer Medicine Program
Lab
Vanharanta
Street address
Haartmaninkatu 8
City
Helsinki
ZIP/Postal code
00014
Country
Finland
Platform ID
GPL96
Series (1)
GSE2152
The effect of FH mutations on fibroid expression profile
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Algorithm (mean scaled to 100)
ABS_CALL
MAS 5.0 Absent, Marginal, Present call (Alpha1 = 0.05, Alpha2 = 0.065)
DETECTION P-VALUE
MAS 5.0 Detection p-value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
50.1
P
0.010317
AFFX-BioB-M_at
100.4
P
0.004998
AFFX-BioB-3_at
38.4
P
0.004998
AFFX-BioC-5_at
161.3
P
0.000446
AFFX-BioC-3_at
109.4
P
0.000095
AFFX-BioDn-5_at
109.6
P
0.000169
AFFX-BioDn-3_at
923.3
P
0.00034
AFFX-CreX-5_at
1368.5
P
0.000044
AFFX-CreX-3_at
2085.4
P
0.000044
AFFX-DapX-5_at
5.2
A
0.48511
AFFX-DapX-M_at
9.2
M
0.062929
AFFX-DapX-3_at
1.4
A
0.794268
AFFX-LysX-5_at
0.8
A
0.659339
AFFX-LysX-M_at
12.4
A
0.39692
AFFX-LysX-3_at
3.3
A
0.41138
AFFX-PheX-5_at
1.7
A
0.737173
AFFX-PheX-M_at
1.9
A
0.645547
AFFX-PheX-3_at
3.2
A
0.574038
AFFX-ThrX-5_at
9
A
0.440646
AFFX-ThrX-M_at
4.2
A
0.60308
Total number of rows:
22283
Table truncated, full table size
580 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM38688.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
GSM38688.EXP.gz
481 b
(ftp)
(http)
EXP
GSM38688.RPT.gz
935 b
(ftp)
(http)
RPT
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