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GEO accession:
Sample GSM38679
Query DataSets for GSM38679
Status
Public on Dec 20, 2005
Title
38m1
Sample type
RNA
Source name
Trizol extracted total RNA from uterine fibroid tissue.
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Uterine fibroid tissue carrying wild-type fumarate hydratase gene.
Submission date
Jan 10, 2005
Last update date
Dec 20, 2005
Contact name
Sakari Vanharanta
E-mail(s)
sakari.vanharanta@helsinki.fi
Organization name
University of Helsinki
Department
Translational Cancer Medicine Program
Lab
Vanharanta
Street address
Haartmaninkatu 8
City
Helsinki
ZIP/Postal code
00014
Country
Finland
Platform ID
GPL96
Series (1)
GSE2152
The effect of FH mutations on fibroid expression profile
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Algorithm (mean scaled to 100)
ABS_CALL
MAS 5.0 Absent, Marginal, Present call (Alpha1 = 0.05, Alpha2 = 0.065)
DETECTION P-VALUE
MAS 5.0 Detection p-value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
79.2
P
0.003212
AFFX-BioB-M_at
171.7
P
0.001248
AFFX-BioB-3_at
61.2
P
0.002556
AFFX-BioC-5_at
275.7
P
0.000147
AFFX-BioC-3_at
162.4
P
0.000081
AFFX-BioDn-5_at
178.2
P
0.00011
AFFX-BioDn-3_at
1275.7
P
0.000127
AFFX-CreX-5_at
2305.3
P
0.000044
AFFX-CreX-3_at
3191.6
P
0.000044
AFFX-DapX-5_at
5.9
A
0.327079
AFFX-DapX-M_at
25
P
0.018281
AFFX-DapX-3_at
2.1
A
0.794268
AFFX-LysX-5_at
0.8
A
0.659339
AFFX-LysX-M_at
5.1
A
0.645547
AFFX-LysX-3_at
5.9
A
0.300606
AFFX-PheX-5_at
2.6
A
0.354453
AFFX-PheX-M_at
15.1
A
0.354453
AFFX-PheX-3_at
19.1
A
0.300606
AFFX-ThrX-5_at
14.1
A
0.327079
AFFX-ThrX-M_at
8.7
A
0.470241
Total number of rows:
22283
Table truncated, full table size
580 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM38679.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
GSM38679.EXP.gz
482 b
(ftp)
(http)
EXP
GSM38679.RPT.gz
935 b
(ftp)
(http)
RPT
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