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Sample GSM3865185 Query DataSets for GSM3865185
Status Public on Jun 11, 2019
Title D546/14: ASD patient
Sample type genomic
 
Source name Peripheral blood
Organism Homo sapiens
Characteristics diagnosis: autism spectrum disorders (ASD)
gender: F
facial dysmorphia: no
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from mononuclear cell of peripheral blood using saline method. DNA quality and quantity was assessed using a Nanodrop Spectrophotometer.
Label Biotin
Label protocol As per manufacturer (Affymetrix)
 
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol The Arrays were then washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000 7G.
Data processing The array image was acquired using Affymetrix GeneChip® Command Console (version 4.0.0.1567G). Copy number values were extracted and converted from CEL files into CYCHP files using Chromosome Analysis Suite software (v.3.3.0.139) in default manner using CYTO2 algorythm v.s. 2.2.0. Reference file was CytoScan HD Array.na33.r2, ChAS Browser was NefAffx Build hg19 (20170803).
 
Submission date Jun 10, 2019
Last update date Jun 11, 2019
Contact name Zuzana Čapková
E-mail(s) capkzu00@gmail.com
Organization name University Hospital Olomouc
Department Department of Medical Genetics
Street address I.P. Pavlova 6
City Olomouc
State/province Czech Republic
ZIP/Postal code 77900
Country Czech Republic
 
Platform ID GPL16131
Series (1)
GSE132453 Comorbidities - microcephaly, facial dysmorphia and epilepsy - increase the risk of the pathogenic CNV finding in patients with intellectual disability and autism

Supplementary file Size Download File type/resource
GSM3865185_SNP65_CytoScanHD_Array_.CEL.gz 30.9 Mb (ftp)(http) CEL
GSM3865185_SNP65_CytoScanHD_Array_.cyhd.cychp.gz 80.3 Mb (ftp)(http) CYCHP
Processed data provided as supplementary file

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