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Sample GSM3856131 Query DataSets for GSM3856131
Status Public on Mar 22, 2020
Title CC602_BD
Sample type RNA
 
Source name non-tumor bile duct
Organism Homo sapiens
Characteristics tissue: non-tumor bile duct
center: Lausanne
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 51.95193946
11715101_s_at 20.37722643
11715102_x_at 43.26352328
11715103_x_at 96.259791
11715104_s_at 41.08477009
11715105_at 18.05011898
11715106_x_at 22.33166317
11715107_s_at 24.75569173
11715108_x_at 19.41955561
11715109_at 22.85103989
11715110_at 23.90545008
11715111_s_at 48.76545066
11715112_at 17.18017452
11715113_x_at 23.66211142
11715114_x_at 27.35233562
11715115_s_at 15.3828664
11715116_s_at 65.46837426
11715117_x_at 16.23728982
11715118_s_at 21.98041328
11715119_s_at 31.63500741

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856131_CC602_100517_A06.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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