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Sample GSM3856129 Query DataSets for GSM3856129
Status Public on Mar 22, 2020
Title CC599_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Lausanne
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 50.47974153
11715101_s_at 19.59191043
11715102_x_at 37.92526099
11715103_x_at 73.92580394
11715104_s_at 31.74589344
11715105_at 16.82372086
11715106_x_at 19.28483592
11715107_s_at 32.04291141
11715108_x_at 17.42443742
11715109_at 17.34844533
11715110_at 19.87737781
11715111_s_at 41.31155965
11715112_at 17.30232634
11715113_x_at 18.96110241
11715114_x_at 24.4454198
11715115_s_at 13.26900683
11715116_s_at 141.5150634
11715117_x_at 14.32567122
11715118_s_at 19.76953772
11715119_s_at 50.00172278

Total number of rows: 49386

Table truncated, full table size 1225 Kbytes.




Supplementary file Size Download File type/resource
GSM3856129_CC599_040417_B04.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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