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Sample GSM3856121 Query DataSets for GSM3856121
Status Public on Mar 22, 2020
Title CC583_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Lausanne
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 66.81280866
11715101_s_at 19.5836401
11715102_x_at 39.23947888
11715103_x_at 97.65053143
11715104_s_at 34.72995712
11715105_at 19.11842622
11715106_x_at 22.51152706
11715107_s_at 22.67566823
11715108_x_at 16.8084959
11715109_at 24.07388839
11715110_at 18.75867798
11715111_s_at 35.76134549
11715112_at 15.0318396
11715113_x_at 23.46507367
11715114_x_at 23.41556817
11715115_s_at 14.26367981
11715116_s_at 88.56368183
11715117_x_at 17.07413513
11715118_s_at 24.19329529
11715119_s_at 41.12738283

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856121_CC583_040417_C03.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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