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Sample GSM3856111 Query DataSets for GSM3856111
Status Public on Mar 22, 2020
Title CC563_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Lausanne
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 42.73821563
11715101_s_at 20.03800017
11715102_x_at 41.85297463
11715103_x_at 69.41301224
11715104_s_at 27.58979933
11715105_at 15.07649596
11715106_x_at 24.32603863
11715107_s_at 29.622018
11715108_x_at 15.37855623
11715109_at 17.27123277
11715110_at 18.09657524
11715111_s_at 40.17015838
11715112_at 16.08840755
11715113_x_at 20.79287391
11715114_x_at 21.72389728
11715115_s_at 13.49104317
11715116_s_at 201.5615324
11715117_x_at 13.69462654
11715118_s_at 21.41201019
11715119_s_at 43.37527498

Total number of rows: 49386

Table truncated, full table size 1225 Kbytes.




Supplementary file Size Download File type/resource
GSM3856111_CC563_040417_B02.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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