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Sample GSM3856108 Query DataSets for GSM3856108
Status Public on Mar 22, 2020
Title CC557_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Lausanne
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 55.8518746
11715101_s_at 17.68334951
11715102_x_at 45.78854268
11715103_x_at 68.94390989
11715104_s_at 23.69744923
11715105_at 17.28452981
11715106_x_at 19.22077589
11715107_s_at 22.94055049
11715108_x_at 16.18244044
11715109_at 18.16393567
11715110_at 15.33873671
11715111_s_at 36.72444101
11715112_at 17.18490343
11715113_x_at 21.45066355
11715114_x_at 24.65217353
11715115_s_at 13.65953938
11715116_s_at 198.409765
11715117_x_at 15.10229274
11715118_s_at 48.02095718
11715119_s_at 26.59235694

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856108_CC557_040417_G01.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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