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Sample GSM3856101 Query DataSets for GSM3856101
Status Public on Mar 22, 2020
Title CC541_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Lausanne
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 48.3341795
11715101_s_at 20.41200859
11715102_x_at 43.62993175
11715103_x_at 64.61832182
11715104_s_at 29.82233687
11715105_at 18.07349236
11715106_x_at 16.27340957
11715107_s_at 23.07230429
11715108_x_at 15.94980164
11715109_at 18.4210768
11715110_at 19.79354301
11715111_s_at 31.19530249
11715112_at 16.22865248
11715113_x_at 26.11776798
11715114_x_at 23.44237886
11715115_s_at 12.61505249
11715116_s_at 338.5953873
11715117_x_at 15.16462944
11715118_s_at 59.66086333
11715119_s_at 30.03964202

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856101_CC541_270317_F12.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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