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Sample GSM3856093 Query DataSets for GSM3856093
Status Public on Mar 22, 2020
Title CC525_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: VH
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 182.6395029
11715101_s_at 21.67687397
11715102_x_at 84.76662804
11715103_x_at 129.4269181
11715104_s_at 61.94498281
11715105_at 32.56383028
11715106_x_at 26.19203832
11715107_s_at 37.93759066
11715108_x_at 19.08685353
11715109_at 37.79844036
11715110_at 24.45493798
11715111_s_at 76.23840294
11715112_at 22.81226179
11715113_x_at 25.12036139
11715114_x_at 23.39507546
11715115_s_at 16.67964352
11715116_s_at 62.1736837
11715117_x_at 18.96379404
11715118_s_at 13.96726408
11715119_s_at 46.66175462

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856093_CC525_270317_G11.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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