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Sample GSM3856084 Query DataSets for GSM3856084
Status Public on Mar 22, 2020
Title CC505_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: VH
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 68.30161873
11715101_s_at 16.66338578
11715102_x_at 49.21006305
11715103_x_at 62.54609441
11715104_s_at 30.18395416
11715105_at 20.09274608
11715106_x_at 20.84378247
11715107_s_at 28.83988322
11715108_x_at 15.26155944
11715109_at 21.86194627
11715110_at 23.60291928
11715111_s_at 54.86582264
11715112_at 20.50494843
11715113_x_at 22.80475721
11715114_x_at 21.49486368
11715115_s_at 16.42309231
11715116_s_at 125.6204428
11715117_x_at 15.55095573
11715118_s_at 30.88308417
11715119_s_at 37.08347042

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856084_CC505_270317_F10.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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