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Sample GSM3856079 Query DataSets for GSM3856079
Status Public on Mar 22, 2020
Title CC499_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Clinic
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 101.1280314
11715101_s_at 17.99175255
11715102_x_at 43.59016792
11715103_x_at 82.07150248
11715104_s_at 44.22377127
11715105_at 21.18675998
11715106_x_at 28.46115979
11715107_s_at 33.18560207
11715108_x_at 15.74647458
11715109_at 19.00002878
11715110_at 20.89464005
11715111_s_at 61.46192488
11715112_at 20.24967654
11715113_x_at 25.52357369
11715114_x_at 19.52512111
11715115_s_at 14.11653508
11715116_s_at 132.4277774
11715117_x_at 20.95669069
11715118_s_at 32.24742125
11715119_s_at 44.08145065

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856079_CC499_270317_A10.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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