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Sample GSM3856076 Query DataSets for GSM3856076
Status Public on Mar 22, 2020
Title CC491_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Clinic
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 204.8695715
11715101_s_at 16.42398661
11715102_x_at 78.1931208
11715103_x_at 97.3633767
11715104_s_at 44.23260512
11715105_at 22.01077472
11715106_x_at 28.03216792
11715107_s_at 38.41194726
11715108_x_at 18.76528268
11715109_at 19.51494657
11715110_at 23.0537569
11715111_s_at 58.80872369
11715112_at 33.25264074
11715113_x_at 24.13043854
11715114_x_at 17.82399227
11715115_s_at 14.84506283
11715116_s_at 56.66032151
11715117_x_at 15.78591583
11715118_s_at 14.1473213
11715119_s_at 54.92689537

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856076_CC491_270317_D09.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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