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Sample GSM3856073 Query DataSets for GSM3856073
Status Public on Mar 22, 2020
Title CC486_BD
Sample type RNA
 
Source name non-tumor bile duct
Organism Homo sapiens
Characteristics tissue: non-tumor bile duct
center: Clinic
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 47.98279911
11715101_s_at 17.47123852
11715102_x_at 48.86783289
11715103_x_at 59.57784486
11715104_s_at 33.14025212
11715105_at 18.17287495
11715106_x_at 15.35363843
11715107_s_at 20.47040973
11715108_x_at 18.086899
11715109_at 18.07275668
11715110_at 19.19390555
11715111_s_at 37.99905411
11715112_at 15.22577174
11715113_x_at 22.622829
11715114_x_at 19.37864583
11715115_s_at 15.53773985
11715116_s_at 175.9788602
11715117_x_at 16.11523774
11715118_s_at 23.86038467
11715119_s_at 51.92658289

Total number of rows: 49386

Table truncated, full table size 1225 Kbytes.




Supplementary file Size Download File type/resource
GSM3856073_CC486_270317_H08.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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