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Sample GSM3856071 Query DataSets for GSM3856071
Status Public on Mar 22, 2020
Title CC484_BD
Sample type RNA
 
Source name non-tumor bile duct
Organism Homo sapiens
Characteristics tissue: non-tumor bile duct
center: Clinic
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 32.40057015
11715101_s_at 18.68960059
11715102_x_at 24.75912976
11715103_x_at 89.37242021
11715104_s_at 32.80721162
11715105_at 17.82702686
11715106_x_at 20.36598639
11715107_s_at 30.49780441
11715108_x_at 15.59523486
11715109_at 16.22121683
11715110_at 23.0428341
11715111_s_at 41.53499182
11715112_at 23.51902832
11715113_x_at 23.74551679
11715114_x_at 21.80160357
11715115_s_at 13.00955653
11715116_s_at 78.73310687
11715117_x_at 19.60171054
11715118_s_at 22.6233309
11715119_s_at 53.57327134

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856071_CC484_100517_D05.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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