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Sample GSM3856069 Query DataSets for GSM3856069
Status Public on Mar 22, 2020
Title CC482_BD
Sample type RNA
 
Source name non-tumor bile duct
Organism Homo sapiens
Characteristics tissue: non-tumor bile duct
center: Clinic
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 56.23108999
11715101_s_at 16.89955163
11715102_x_at 38.67707094
11715103_x_at 76.83479469
11715104_s_at 44.2339154
11715105_at 18.32891231
11715106_x_at 21.40173468
11715107_s_at 31.9424395
11715108_x_at 17.03585388
11715109_at 20.53101551
11715110_at 17.38246472
11715111_s_at 39.9404792
11715112_at 20.1939044
11715113_x_at 23.32214567
11715114_x_at 28.22153629
11715115_s_at 15.63593408
11715116_s_at 88.39987181
11715117_x_at 17.87266902
11715118_s_at 27.20642136
11715119_s_at 78.68418378

Total number of rows: 49386

Table truncated, full table size 1225 Kbytes.




Supplementary file Size Download File type/resource
GSM3856069_CC482_270317_E08.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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