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Sample GSM3856059 Query DataSets for GSM3856059
Status Public on Mar 22, 2020
Title CC461_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Clinic
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 56.12329715
11715101_s_at 18.26638986
11715102_x_at 71.7901912
11715103_x_at 77.50162943
11715104_s_at 36.38435667
11715105_at 17.24837866
11715106_x_at 25.74796886
11715107_s_at 42.17399366
11715108_x_at 16.63767525
11715109_at 18.02548237
11715110_at 21.66372052
11715111_s_at 49.37700812
11715112_at 29.96353078
11715113_x_at 22.33741814
11715114_x_at 27.18495504
11715115_s_at 14.13595233
11715116_s_at 96.42120679
11715117_x_at 18.50901296
11715118_s_at 19.21813301
11715119_s_at 42.21243503

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856059_CC461_270317_G06.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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