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Sample GSM3856056 Query DataSets for GSM3856056
Status Public on Mar 22, 2020
Title CC456_BD
Sample type RNA
 
Source name non-tumor bile duct
Organism Homo sapiens
Characteristics tissue: non-tumor bile duct
center: Clinic
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 85.78960259
11715101_s_at 18.82785962
11715102_x_at 51.16589654
11715103_x_at 137.5008011
11715104_s_at 51.80813833
11715105_at 19.12575001
11715106_x_at 21.2638301
11715107_s_at 34.81972319
11715108_x_at 17.37379675
11715109_at 24.16391029
11715110_at 24.31572074
11715111_s_at 67.01564487
11715112_at 17.91618689
11715113_x_at 22.54447426
11715114_x_at 22.6719612
11715115_s_at 17.83332888
11715116_s_at 111.8442237
11715117_x_at 17.06740947
11715118_s_at 24.10593815
11715119_s_at 33.26261311

Total number of rows: 49386

Table truncated, full table size 1225 Kbytes.




Supplementary file Size Download File type/resource
GSM3856056_CC456_270317_D06.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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