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Sample GSM3856053 Query DataSets for GSM3856053
Status Public on Mar 22, 2020
Title CC453_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Clinic
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 62.19299023
11715101_s_at 17.27436655
11715102_x_at 52.96232006
11715103_x_at 73.465899
11715104_s_at 41.08680212
11715105_at 18.10791987
11715106_x_at 21.88689135
11715107_s_at 20.82828664
11715108_x_at 19.06628669
11715109_at 21.02788755
11715110_at 24.85336105
11715111_s_at 34.13381766
11715112_at 18.85566075
11715113_x_at 19.48096174
11715114_x_at 24.10341479
11715115_s_at 15.44364415
11715116_s_at 63.00567723
11715117_x_at 16.43262478
11715118_s_at 19.53215464
11715119_s_at 38.06476252

Total number of rows: 49386

Table truncated, full table size 1225 Kbytes.




Supplementary file Size Download File type/resource
GSM3856053_CC453_270317_A06.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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