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Sample GSM3856052 Query DataSets for GSM3856052
Status Public on Mar 22, 2020
Title CC451_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Clinic
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 90.00054717
11715101_s_at 16.35790828
11715102_x_at 43.85365092
11715103_x_at 170.3736861
11715104_s_at 28.47467493
11715105_at 18.35480978
11715106_x_at 33.86974022
11715107_s_at 44.76384239
11715108_x_at 16.65916389
11715109_at 21.03159813
11715110_at 22.10885628
11715111_s_at 34.76099819
11715112_at 16.50395977
11715113_x_at 21.64566488
11715114_x_at 19.52993663
11715115_s_at 17.40864073
11715116_s_at 80.52195833
11715117_x_at 16.5108093
11715118_s_at 18.36815129
11715119_s_at 30.53407109

Total number of rows: 49386

Table truncated, full table size 1225 Kbytes.




Supplementary file Size Download File type/resource
GSM3856052_CC451_270317_H05.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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