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Sample GSM3856050 Query DataSets for GSM3856050
Status Public on Mar 22, 2020
Title CC445_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Clinic
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 48.75186117
11715101_s_at 17.50026312
11715102_x_at 40.64372613
11715103_x_at 78.63809471
11715104_s_at 34.6374791
11715105_at 16.71166548
11715106_x_at 19.98158098
11715107_s_at 25.18852904
11715108_x_at 19.68833225
11715109_at 16.82780203
11715110_at 18.96468832
11715111_s_at 71.33018661
11715112_at 14.28105376
11715113_x_at 24.56936779
11715114_x_at 22.64427898
11715115_s_at 14.90616718
11715116_s_at 248.5345765
11715117_x_at 15.12168089
11715118_s_at 30.45232003
11715119_s_at 28.89498172

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856050_CC445_270317_E05.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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