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Sample GSM3856048 Query DataSets for GSM3856048
Status Public on Mar 22, 2020
Title CC443_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Clinic
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 88.74411619
11715101_s_at 18.46242857
11715102_x_at 69.22670058
11715103_x_at 69.41301224
11715104_s_at 41.31343226
11715105_at 15.50195839
11715106_x_at 21.00845716
11715107_s_at 25.73536227
11715108_x_at 15.71566925
11715109_at 20.0923648
11715110_at 21.13004944
11715111_s_at 34.0667212
11715112_at 26.05799926
11715113_x_at 25.79232262
11715114_x_at 26.88072116
11715115_s_at 19.58259741
11715116_s_at 244.6843534
11715117_x_at 18.86908646
11715118_s_at 23.71843762
11715119_s_at 41.62064485

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856048_CC443_270317_C05.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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