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Sample GSM3856047 Query DataSets for GSM3856047
Status Public on Mar 22, 2020
Title CC442_BD
Sample type RNA
 
Source name non-tumor bile duct
Organism Homo sapiens
Characteristics tissue: non-tumor bile duct
center: Clinic
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 52.93617509
11715101_s_at 16.53586367
11715102_x_at 46.55397537
11715103_x_at 93.01736632
11715104_s_at 34.57118178
11715105_at 18.09034201
11715106_x_at 19.18331781
11715107_s_at 26.28704668
11715108_x_at 19.52464646
11715109_at 23.71582283
11715110_at 17.96044464
11715111_s_at 48.92368539
11715112_at 17.58445766
11715113_x_at 23.45357019
11715114_x_at 19.94140312
11715115_s_at 16.21024763
11715116_s_at 55.98403388
11715117_x_at 17.61094671
11715118_s_at 22.70285085
11715119_s_at 37.30248478

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856047_CC442_270317_B05.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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