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Sample GSM3856042 Query DataSets for GSM3856042
Status Public on Mar 22, 2020
Title CC435_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Clinic
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 54.20311308
11715101_s_at 16.84472437
11715102_x_at 48.99788962
11715103_x_at 114.5639011
11715104_s_at 41.27570195
11715105_at 17.66046933
11715106_x_at 35.66205611
11715107_s_at 30.27195888
11715108_x_at 20.0338971
11715109_at 23.83228241
11715110_at 26.95153412
11715111_s_at 44.41900515
11715112_at 19.67977038
11715113_x_at 34.82565371
11715114_x_at 37.01700659
11715115_s_at 14.44108097
11715116_s_at 84.7993121
11715117_x_at 17.38843498
11715118_s_at 13.23664781
11715119_s_at 21.78176042

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856042_CC435_270317_E04.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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