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Sample GSM3856036 Query DataSets for GSM3856036
Status Public on Mar 22, 2020
Title CC424_BD
Sample type RNA
 
Source name non-tumor bile duct
Organism Homo sapiens
Characteristics tissue: non-tumor bile duct
center: Clinic
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 75.91898447
11715101_s_at 19.042432
11715102_x_at 50.9043067
11715103_x_at 63.94695278
11715104_s_at 30.97601581
11715105_at 18.60747285
11715106_x_at 24.78942349
11715107_s_at 23.128971
11715108_x_at 20.30594216
11715109_at 17.35199065
11715110_at 21.31588389
11715111_s_at 44.44386115
11715112_at 14.89492555
11715113_x_at 27.07725785
11715114_x_at 25.95519589
11715115_s_at 13.47739352
11715116_s_at 94.49577867
11715117_x_at 16.57069134
11715118_s_at 22.10655557
11715119_s_at 25.45011626

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856036_CC424_270317_H03.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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