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Sample GSM3856023 Query DataSets for GSM3856023
Status Public on Mar 22, 2020
Title CC403_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Clinic
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 89.41473291
11715101_s_at 18.73257577
11715102_x_at 59.04313276
11715103_x_at 78.68411327
11715104_s_at 47.46506224
11715105_at 38.09641028
11715106_x_at 31.29164274
11715107_s_at 26.24720142
11715108_x_at 17.06579543
11715109_at 18.83051887
11715110_at 23.0449535
11715111_s_at 45.71647016
11715112_at 22.8991667
11715113_x_at 23.22364373
11715114_x_at 25.58845283
11715115_s_at 14.0903181
11715116_s_at 106.2889271
11715117_x_at 16.78451487
11715118_s_at 17.47688556
11715119_s_at 34.37374759

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856023_CC403_270317_C02.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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