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Sample GSM3856018 Query DataSets for GSM3856018
Status Public on Mar 22, 2020
Title CC387_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Mayo
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 73.63147015
11715101_s_at 15.462679
11715102_x_at 39.88361314
11715103_x_at 46.52744108
11715104_s_at 27.62551115
11715105_at 16.68138558
11715106_x_at 21.56933331
11715107_s_at 23.48865943
11715108_x_at 15.93458593
11715109_at 15.40691736
11715110_at 25.40511583
11715111_s_at 40.31805136
11715112_at 19.67327056
11715113_x_at 19.96657953
11715114_x_at 17.56749902
11715115_s_at 14.255871
11715116_s_at 202.3132529
11715117_x_at 14.57986991
11715118_s_at 101.8530047
11715119_s_at 43.24150383

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856018_CC387_270317_F01.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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