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Sample GSM3856002 Query DataSets for GSM3856002
Status Public on Mar 22, 2020
Title CC351_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Mayo
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 63.80201652
11715101_s_at 19.06176245
11715102_x_at 52.34509237
11715103_x_at 51.17453533
11715104_s_at 28.65644571
11715105_at 18.40718357
11715106_x_at 19.39525659
11715107_s_at 21.17820696
11715108_x_at 15.38575172
11715109_at 15.95432562
11715110_at 21.52952666
11715111_s_at 39.80932603
11715112_at 16.18682203
11715113_x_at 20.0066435
11715114_x_at 21.42430176
11715115_s_at 12.87725182
11715116_s_at 124.1802703
11715117_x_at 15.38799679
11715118_s_at 31.50150517
11715119_s_at 36.58323411

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856002_CC351_140317_F11.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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