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Sample GSM3855998 Query DataSets for GSM3855998
Status Public on Mar 22, 2020
Title CC341_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Mayo
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 38.4223504
11715101_s_at 18.70854668
11715102_x_at 39.92757113
11715103_x_at 58.64919419
11715104_s_at 29.24487568
11715105_at 17.24975687
11715106_x_at 20.16489563
11715107_s_at 22.50639817
11715108_x_at 15.01751601
11715109_at 14.86063347
11715110_at 18.26782197
11715111_s_at 27.44233286
11715112_at 15.37968976
11715113_x_at 21.29606418
11715114_x_at 19.70522642
11715115_s_at 12.16230788
11715116_s_at 99.23142195
11715117_x_at 12.92114403
11715118_s_at 16.96462531
11715119_s_at 90.54406221

Total number of rows: 49386

Table truncated, full table size 1225 Kbytes.




Supplementary file Size Download File type/resource
GSM3855998_CC341_140317_C11.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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