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Sample GSM3855990 Query DataSets for GSM3855990
Status Public on Mar 22, 2020
Title CC301_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Mayo
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 55.34840375
11715101_s_at 22.60118849
11715102_x_at 46.75926375
11715103_x_at 68.93646792
11715104_s_at 31.95434771
11715105_at 17.23678965
11715106_x_at 23.35055537
11715107_s_at 31.83308243
11715108_x_at 16.933216
11715109_at 17.01400373
11715110_at 20.04980011
11715111_s_at 56.48026038
11715112_at 14.02408579
11715113_x_at 21.20804358
11715114_x_at 18.64471543
11715115_s_at 11.49048287
11715116_s_at 154.6340716
11715117_x_at 13.85252178
11715118_s_at 20.1974439
11715119_s_at 66.01353432

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3855990_CC301_140317_A09.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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